Publications – Mondal Lab

Publications

Multifunctional Light Sheet Imaging Cytometry

76. Prakash Joshi, Prashant Kumar and Partha P. Mondal, Fluorescence based Multifunctional Imaging Flow Cytometry for High-throughput Optical Interrogation of Live Cells, Nature Comm. Phys. 2023, (in Review).
First 3D Scanning Single Molecule Super-resolution Microscopy

75. J. Basumatary, and Partha P. Mondal, Scanning Single Molecule Localization Microscopy (scanSMLM) for Super-resolution Volume Imaging, Nature Comm. Biol. Accepted (2023).
Temporally Resolved PAR-shifted SMLM

74. J. Basumatary, N. Baro, P. Joshi and Partha P. Mondal, Temporally resolved SMLM (with large PAR shift) enabled visualization of dynamic HA cluster formation and migration in a live cell, Sci. Rep. (Nature Publishing) 12, 10229, 2023 (Accepted).
First Light Sheet Optical Tweezer

73. Partha P. Mondal, N. Baro, A. Singh, P. Joshi and J. Basumatary, Lightsheet optical tweezer (LOT) for optical manipulation of microscopic particles and live cells, Sci. Rep. (Nature Publishing) 12, 10229 (2022).
Next Generation iLIFE System

72. P. Kumar, …., Partha P. Mondal, Light sheet based volume flow cytometry (VFC) for rapid volume reconstruction and parameter estimation on the go, Sci. Rep. (Nature Publishing) 12, 78 (2022).
World’s Fastest Light Sheet Volume Visualization System

71. J. Basumatary, …., Partha P. Mondal, Fluorescence based rapid optical volume screening system (OVSS) for interrogating multicellular organisms, Sci. Rep. (Nature Publishing) 11, 7616 (2021).
70. P. Joshi, Partha P. Mondal, Adaptable single molecule localization microscopy (aSMLM) for superresolution optical fluorescence imaging, Appl. Phys. Lett.,119, 173703 (2021).
69. Partha P. Mondal, A perspective on light sheet microscopy and imaging: Applications across the breadth of applied physics and biophysics, Appl. Phys. Lett.,119, 160502 (2021).
68. P. Joshi and Partha P. Mondal, Single-Molecule Clustering for Super-Resolution Optical Fluorescence Microscopy, Photonics,9, 7 2021.
Invention of World’s First Lightsheet Optical Tweezer (LOT)

67. Partha P. Mondal, Ankur Singh, Prakash Joshi, Jigmi Basumatary, Neptune Baro, Lightsheet Optical Tweezer (LOT) for Optical Manipulation of Microscopic Particles and Live Cells, BioRxiv, 2021.
Ultra-Superresolution POSSIBLE Microscopy (Single Molecule Physics)

66. Partha P. Mondal,Probabilistic Optically-Selective Single-Molecule Imaging Based Localization Encoded (POSSIBLE) microscopy for Ultra-Superresolution Imaging,PloS One, 15, e0242452 (2020).
World’s First Lightsheet Nanolithography Technique – iCLASS

65. Kavya Mohan and Partha P. Mondal, Experimental Realization of Sub-micron Patterning Using Counter-propagating Interfering Lightsheets (iCLASS), OSA Continuum, 2020.

ArXiv Article Kavya Mohan, Partha Pratim Mondal, Interfering Coherent Lightsheets Assisted Structure Synthesis (iCLASS) Technique for Nanofabrication, ArXiv, 27 Aug., 2018.

64. Kavya Mohan, Ayush Tyagi, and Partha P. Mondal, Multi-sheet light enables optical interference lithography, Rev. Sci. Instrum. 89, 066106 (2018).
First Imaging Cytometry System for Whole Organism High-Throughput Screening

63. [Editor’s Choice, Appl. Phys. Lett.] R. K. Chelur, S. Padmanabhan, K. Shirlekar, K. Rajan, R. Manjithaya, V. Singh and Partha P. Mondal, Integrated Light-sheet imaging and flow-based enquiry (iLIFE) system for 3D in-vivo imaging of multicellular organism, Appl. Phys. Lett., 111, (2017).
Super-resolution Volume Imaging : SMILE Microscopy

62. [SMILE-TIRF] Partha P. Mondal and Samuel T. Hess, Total internal reflection fluorescence based multiplane localization microscopy enables super-resolved volume imaging, App. Phys. Lett. 110, 211102 (2017).

[ ArXiv: Partha P. Mondal, SMILE Microscopy : fast and single-plane based super-resolution volume imaging, arXiv:1608.00542v2, 2016 || https://arxiv.org/abs/1608.00542

61. [SMILE-Widefield] Partha P. Mondal, Simultaneous multiplane imaging-based localization encoded (SMILE) microscopy for super-resolution volume imaging, Micros. Res. Tech. 80, 333 (2017).
60. K. Mohan and Partha P. Mondal, Light sheet based lithography technique for patterning an array of microfluidic channel, Micros. Res. Tech., 2016.
59. K. Mohan and Partha P. Mondal, Experimental observation of nano-channel pattern in light sheet laser interference nanolithography system, Rev. Sci. Intrum., 87, 066107 (2016).
58. Chelur K. Rasmi, Mani Madhangi, Upendra Nongthomba and Partha P. Mondal, Curtailed light sheet microscopy for rapid imaging of macroscopic biological specimens, Micros. Res. Tech. 79, 455 (2016).
57. || Feature Article || Partha P. Mondal, Nikki M. Curthoys and Samuel T. Hess, Clean localization super-resolution microscopy for 3D biological imaging, AIP Advances 6, 015017 (2016).
56. K. Mohan and Partha P. Mondal, Spatial Filter Based Light-Sheet Laser Interference Technique for 3D Nanolithography, Applied Physics Letters, 106, 083112 (2015).
55. C. K. Rasmi, Kavya Mohan, M. Madhangi, K. Rajan, U. Nongthomba and Partha P. Mondal, Limited View Light Sheet Microscopy for Three Dimensional Volume Imaging, Applied Physics Letters 107, 263701 (2015).
54.M Rasmi C. K., K. Rajan and Partha P. Mondal, A Unified Accelerated Maximum Likelihood Technique for Widefield, Confocal and Super-resolution 4pi icroscopy, Microsc. Res. Tech. 2015. (in-press)
53.A. Jabbar, Rasmi C. K., S. Dilipkumar, K. Rajan, and Partha P. Mondal, Real-Time Maximum A-posteriori Image Reconstruction for Fluorescence Microscopy,AIP Advances, 5, 084801 (2015).
52. Partha P. Mondal, S. Dilipkumar and Kavya M, Efficient Generation of Diffraction-Limited Multi-Sheet Pattern for Biological Imaging,,Optics Letters, Optics Letters,
51. S. Dilipkumar, Ravi M. and Partha P. Mondal, Multispectral Bayesian Reconstruction Technique for Real-time Two Color Fluorescence Microscopy, RSC Advances, 5, 13175-13183 (2015).
First Light-Sheet Based Nanolithography Technology

50. Kavya M and Partha P. Mondal, Two-photon excitation-based 2pi Light-sheet system for nano-lithography, Microsc. Res. Tech., 78, 1-7 (2015).
49. Partha P. Mondal, The elegance of localization microscopy and the promise it holds, Micros. Res. Tech., 2015 .
48. || Editor’s Pick || Raju R., Kavya M. and Partha P. Mondal,High resolution light-sheet based high-throughput imaging cytometry system enables visualization of intra-cellular organelles, AIP Advances 4, 097125 (2014).
47. || Temporal Resolution Limit || Partha P. Mondal, Temporal resolution in fluorescence imaging, Front. Mol. Biosci, 1, 11 (2014).

ArXiv Article [#1] Partha P. Mondal, Mini-review on the temporal resolution of fluorescence imaging systems, arXiv:1407.6189, ArXiv (2014).
46. S. B. Purnapatra, Kavya M. and Partha P. Mondal, Generation of multiple sheets of light using spatial-filtering techniques,Optics Letters, 39, 4715 (2014).
45. T. Bose, D. Latawise, Partha P. Mondal, and S. Mandal, Overview of nano-drugs characteristics for clinical application: the journey from the entry to the exit point,Jl. Nanopart. Res. 16, 2527 (2014).
44. || Multiple Light Sheet Microscopy ||Kavya M., S. B. Purnapatra and Partha P. Mondal Three dimensional fluorescence imaging using multiple light-sheet microscopy, PLoS ONE 9, e96551 (2014).

CONF.[2].Kavya M., S. B. Purnapatra and Partha P. Mondal Shilpa Dilipkumar and Partha P. Mondal, Taylor series based map approach outperforms existing image reconstruction techniques, Focus on Microscopy 2014, Sydney, Australia.

CONF.[1]. Shilpa Dilipkumar and Partha P. Mondal, In-depth 3D image reconstruction for fluorescence microscopy, Focus on Microscopy 2014, Sydney, Australia.
43. Kavya M. and Partha P. Mondal, Experimental verification of vectorial theory to determine field at the geometrical focus of a cylindrical Lens, Micros. Res. Tech., 77, 105-109 (2014).
42. Shilpa Dilipkumar, Sandra Montalescot and Partha P. Mondal, Image reconstruction enables high resolution imaging at large penetration depths in fluorescence microscopy, Applied Physics Letters, 103, 173703 (2013).
41. || COVERPAGE Article|| FIRST Light Sheet based Imaging Cytometry System ||Raju R., Kavya M. and Partha P. Mondal, Light Sheet Based Imaging Flow Cytometry on a Microfluidic Platform, Micros. Res. Tech. 76, 1101-1107 (2013).
40. Kavya M., Raju R. and Raju R., Kavya M. and Partha P. Mondal, Spatial Filtering Nearly Eliminates the Side-lobes in Single- and Multi- Photon 4pi-TypeC Super-resolution Fluorescence Microscopy, Rev. Sci. Instrum. 84, 093704 (2013).
39. || Book on Fluorescence for ALL (Biologist, Physicist, Chemist and Engineers) || Partha P. Mondal and A. Diaspro, BOOK: Fundamentals of Fluorescence Microscopy, Springer, 2013.
38. Shilpa Dilipkumar and Partha P. Mondal, Taylor Series Expansion based Multidimensional Image Reconstruction for Confocal and 4pi Super-resolution Microscopy, Applied Physics Letters, 103 , 073702 (2013).
37. Subhajit B. Purnapatra and Partha P. Mondal, Generation of Extended Light Sheet for Single and Multi- Photon Fluorescence Microscopy, Applied Physics Letters, 03, 043701 (2013)
36. || First Computable Expression for Field at the Focus of Cylindrical Lens System || Subhajit B. Purnapatra and Partha P. Mondal, Determination of electric field at and near the focus of a cylindrical lens for applications in fluorescence microscopy, AIP Advances, Vol. 3, 052124 (2013).
35. Partha Pratim Mondal, Shilpa Dilipkumar, Kavya M, Raju Regmi, Subhajit B Purnapatra, Developments in Single and Multi-photon Fluorescence Microscopy for High Resolution Imaging, IISc Journal, Vol. 93, No.1 (2013).
34. S. B. Purnapatra, S. Bera and Partha P. Mondal, Spatial filter based Bessel-like beam for improved penetration depth imaging in fluorescence microscopy, Nature Scientific Reports 2, 692 (2012).
33. S. Dilipkumar and Partha P. Mondal, Multidimensional Image Reconstruction for Two-Color Fluorescence Microscopy, Rev. Sci. Instrum., 83, 123704 (2012).
32. Partha P. Mondal and Alberto Diaspro, Point Spread Function Engineering for Super Resolution Single- and Multi- Photon Fluorescence Microscopy, Advances in Imaging and Electron Physics, Elsevier, Vol. 175, (2012).
31. || High Temporal Resolution Microscopy || M. Ravi Verma, K. Rajan and Partha P. Mondal, Fast Image Reconstruction for Fluorescence Microscopy, AIP Advances 2, 032174 (2012).
30. P. Bianchini, Partha P. Mondal, S. Dilipkumar, F. C. Zanacchi, E. Ronzitti, and Alberto Diaspro, Multiphoton microscopy advances towards super-resolution, Cellular Imaging Techniques for Neuroscience and Beyond, pp. 121-140 (2012).
29. || MESO Microscopy || Partha P. Mondal, Alberto Diaspro, Simultaneous multilayer scanning and detection for multiphoton fluorescence microscopy, Nature Scientific Reports,1, 149 (2011).
28. Shilpa Dilipkumar and Partha P. Mondal, High resolution multiple excitation spot optical microscopy, AIP Advances 1, 022128 (2011) .
27. Shilpa Dilipkumar, Alberto Diaspro, and Partha P. Mondal, Spatial filter based 3D resolution improvement and polarization properties of multiphoton multiple-excitation-spot-optical microscopy, Rev. Sci. Instrum. 82, 063705 (2011).
26. Diaspro, A and Bianchini, P and Cella, Zanacchi F and Harke, B and Vicidomini, G and Galiani, S and Lavagnino, Z and Chacko, J and Ronzitti, E and Faretta, M and Furia, L and Mondal, PP , Imaging Cytometry Requires The Third Dimension And High Spatial And Temporal Resolution. In: Cytometry A, 79A (12). p. 1031 (2011).
25. Partha P. Mondal, Richard J. Gilbert and Peter T. C. So, Photobleaching Reduced Fluorescence Correlation Spectroscopy, Appl. Phys. Lett. 97, 103704 (2010).
24. Partha P. Mondal, Chain of Excitation Spot Generation by Aperture Engineering, Jl. Applied Physics, 107,086101 (2010).
23. Partha P. Mondal, S. Mondal and Alberto Diaspro, Dynamic Point Spread Function for Single- and Multi- Photon Fluorescence Microscopy, Rev. Sci. Instr., 81,046103 (2010).
22. || COVERPAGE Article|| Partha P. Mondal, Multiple Excitation Nano-Spot Generation and Confocal Detection for Far-Field Microscopy, Nanoscale, 2, 381 (2010).
21. Partha P. Mondal, Multi-Focal Multiphoton Excitation Fluorescence Microscopy,Rev. Sci. Instrum., 80, 096104 (2009).
20. Partha P. Mondal, Paolo Bianchini, Zeno Lavagnino and A. Diaspro, Photobleaching Minimization in Single- and Multi- Photon Fluorescence Imaging, Chapter 8 in Nanoscopy and Mutidimensional Optical Fluorescence Microscopy, edited by Alberto Diaspro, CRC. (27 pages), 2009.
19. Partha P. Mondal, Richard J. Gilbert and Peter T. C. So, Multi-photon Induced Cubic-to-Quartet Intensity Dependent Transition of Anti-Stoke Raman Signal, Applied Physics Letters, 94, 103901 (2009).
18. Partha P. Mondal, Richard J. Gilbert and Peter T. C. So, Plasmon Enhanced Fluorescence Microscopy Below Quantum Noise Limit With Reduced Photobleaching Effect”, Applied Physics letters , 93, 093901 (2008).
17. Partha P. Mondal, Minimizing photobleaching in fluorescence microscopy by depleting triplet states, Applied Physics Letters, 92, 013902 (2008).
16. Partha P. Mondal, and A. Diaspro, Lateral resolution improvement in two-photon excitation microscopy by aperture engineering, Optics Communication, 281, 1855 (2008).
15. Partha P. Mondal, and A. Diaspro, Electric field allowed molecular transitions for one and two photon excitation microscopy, European Biophysical Journal (Biophysics Letters), 2008.
14. Partha P. Mondal, G. Vicidomini and A. Diaspro, Image reconstruction for multi-photon fluorescence microscopy, Applied Physics Letters, 92, 103902 (2008).
13. F. Cella, E. Ronzitti, G. Vicidomini, Partha P. Mondal, and A. Diaspro, Studying the illumination puzzle towards an isotropic increase of optical resolution, Proc. SPIE, 6861, 686112 (2008).
12. D. Mazza, P. Bianchinni, V. Caorsi, F. Cella, Partha P. Mondal, E. Ronzitti, I. Testa, G. Vicidomini and A. Diaspro, Biophotonics Book, Chapter 4, 47 (2008).
11. Partha P. Mondal, and A. Diaspro, Reduction of Higher Order Photobleaching in Two Photon Excitation Microscopy, Physical Review E 75, 061904 (2007) .
10. Partha P. Mondal, Giuseppe Vicidomini and A. Diaspro, Markov Random Field Aided Bayesian Approach for Image Reconstruction in confocal microscopy, Journal of Applied Physics, 102, 044701 (2007).
9. G. Vicidomini. Partha P. Mondal, and A. Diaspro, Soft computing approach to confocal and two-photon excitation microscopy, Proc. SPIE 6443, 644319 (2007).
8. G. Vicidomini. Partha P. Mondal,and A. Diaspro, Fuzzy Logic and maximum a-posteriori based image restoration for confocal microscopy, Optics Letters, Vol.31, N0. 24, pp. 3582-3584, 2006.
7. Partha P. Mondal, and K. Rajan, Diffusion Driven Reconstruction for Positron Emission Tomography, Applied Physics Letters, Vol. 89, pp. 193901, 2006.
6. Partha P. Mondal, Positron emission tomographic map reconstruction using fuzz-median filter, Applied Physics Letters, Vol. 89, pp. 153903, 2006.
5. Partha P. Mondal, K. Rajan and I. Ahmed, A New Filter for Biomedical Imaging and Image Processing, Journal of Optical Society of America A, Vol. 23, No. 7, pp. 1678-1686, 2006.
4. Ragunathan Padmashri, Archan Ganguly, Partha P. Mondal, K. Rajan, and S. K. Sikdar, Kynurenate treatment of autaptic hippocampal microcultures affect localized voltage-dependent calcium diffusion in the dendrites, Cell Calcium, vol. 39, pp. 247-258, 2006.
3. Partha P. Mondal, and K. Rajan, Fuzzy Rule based Image Reconstruction for Positron Emission Tomography, Journal of Optical Society of America A,Vol.22, No.9, pp. 1763-1771, 2005.
2. || COVERPAGE Article|| Partha P. Mondal and K. Rajan, Neural Network Based Image Reconstruction for Positron Emission Tomography, Applied Optics, OSA, Vol.44, No.30, pp. 6345-6352, 20 Oct., 2005.
1. Partha P. Mondal and K. Rajan, Image Reconstruction by Conditional Entropy Maximization for Positron Emission Tomography, IEE Vision, Image and Signal processing, vol.151, No.5, pp.345-352, 2004.